Conserved domains are displayed in four different colours to give you some idea of the confidence you can have about the occurrence of the domain.
The protein is displayed at the top | in this color |
Domain hits which have an expect value of less 1e-4 and in which the alignment covers at least 0.65 of the domain |
in this color |
Domain hits which have an expect value of more than 1e-4 and in which the alignment covers at least 0.65 of the domain |
in this color |
Domain hits which have an expect value of less than 1e-4 and in which the alignment does not cover at least 0.65 of the domain |
in this color |
Domain hits which have an expect value of more than 1e-4 and in which the alignment does not cover at least 0.65 of the domain |
in this color |
The titles and abstracts of publications are searched for named entities. This is done using a program called geniatagger. To know about what named entities are and what geniatagger does visit the Genia Tagger page. To find out more about text mining visit the NACTEM web site.
For each publication, the named entities extracted are stored in the database along with other details of the publication. It is these named entities that are actually searched when you do a literature search.